Part I

Slide 1

Things bioinformaticians care about

  • Experimental design
  • The biological question
  • Statistics
  • Reproducibility
  • File formats

Experimental design

Reproducibility

File formats

Brief story about Excel and gene names

Brief story about Excel and gene names

How (not to) work with Excel

Never manually change Excel files

  • Manual changes cannot be tracked
  • You have to record every change you make
  • Otherwise, this is not reproducible science!

How (not to) work with Excel

Never use formatting for data

Never encode information as formatting, always use explicit columns

Color / font size / font style cannot be read automatically

Slide 1

To compile, type quarto render template.qmd

Make sure you have Quarto 1.2 installed from here.

Multicolumn slide

Left column title

Left column…

Right column title

Right column (60%)…

(adding .fragment causes the contents to be displayed in steps)

Part II separator slide

Simple numbered and unnumbered lists

  • One
  • Two
  1. One
  2. Two

Incremental list

  • Item 1
  • Item 2
  • Item 3

Incremental contents

First part

Second part

This is a slide without a title (use the dashes to separate)

Transitions

Define them in the YAML header or like here, in the slide title.

Types: none, fade, slide, convex, concave, zoom

Code

plot(1:10)
Figure 1: A dumb plot

Tip

Ctrl-click on the image to zoom. And here is a 3.1415927 for you.

Code

There are many customization options for the code. For example, you can highlight (and even animate) certain lines of code:

a <- rnorm(10)
b <- rnorm(10) + a
c <- a + b * rnorm(10)

You can also specify where precisely should the output of the code go: below the code (default), on the next slide, on a right-hand column…

Thank you

Acknowledgements

  • N.N.
  • Y.Y.

Sources

  • Source 1
  • Source 2

Core Unit for Bioinformatics, BIH@Charite